Package: supclust 1.1-2

supclust: Supervised Clustering of Predictor Variables Such as Genes

Methodology for supervised grouping aka "clustering" of potentially many predictor variables, such as genes etc, implementing algorithms 'PELORA' and 'WILMA'.

Authors:Marcel Dettling [aut], Martin Maechler [aut, cre]

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supclust.pdf |supclust.html✨
supclust/json (API)

# Install 'supclust' in R:

install.packages('supclust', repos = c('https://mmaechler.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mmaechler/supclust/issues

Uses libs:

openblas– Optimized BLAS

Datasets:

leukemia.x - A part of the Golub's famous AML/ALL-leukemia dataset
leukemia.y - A part of the Golub's famous AML/ALL-leukemia dataset
leukemia.z - A part of the Golub's famous AML/ALL-leukemia dataset

On CRAN:

11 exports 2 stars 1.92 score 3 dependencies 5 mentions 28 scripts 267 downloads

Last updated 1 months agofrom:4268e26e82. Checks:OK: 9. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 13 2024
R-4.5-win-x86_64	OK	Sep 13 2024
R-4.5-linux-x86_64	OK	Sep 13 2024
R-4.4-win-x86_64	OK	Sep 13 2024
R-4.4-mac-x86_64	OK	Sep 13 2024
R-4.4-mac-aarch64	OK	Sep 13 2024
R-4.3-win-x86_64	OK	Sep 13 2024
R-4.3-mac-x86_64	OK	Sep 13 2024
R-4.3-mac-aarch64	OK	Sep 13 2024

Exports:aggtrees dlda logreg margin nnr pelora score sign.change sign.flip standardize.genes wilma

Dependencies:class MASS rpart

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Internal functions for Supervised Grouping	back.search p.1clust printClist ridge.coef
Extract the Model Coefficients of Pelora	coef.pelora
Classification with Wilma's Clusters	aggtrees dlda logreg nnr
Extract the Fitted Values of Pelora	fitted.pelora
Extract the Fitted Values of Wilma	fitted.wilma
A part of the Golub's famous AML/ALL-leukemia dataset	leukemia leukemia.x leukemia.y leukemia.z
Classification Margin Between Two Sample Classes	margin
Supervised Grouping of Predictor Variables	pelora
2-Dimensional Visualization of Pelora's Output	plot.pelora
2-Dimensional Visualization of Wilma's Output	plot.wilma
Predict Method for Pelora	predict.pelora
Predict Method for Wilma	predict.wilma
Print Method for Pelora Objects	print.pelora
Print Method for Wilma Objects	print.wilma
Wilcoxon Score for Binary Problems	score
Sign-flipping of Predictor Variables to Obtain Equal Polarity	sign.change
Sign-flipping of Predictor Variables to Obtain Equal Polarity	sign.flip
Standardization of Predictor Variables	standardize.genes
Summary Method for Pelora Objects	summary.pelora
Summary Method for Wilma Objects	summary.wilma
Supervised Clustering of Predictor Variables	wilma